VIM

Molecule type: protein
Alternative name(s): VIM
External ID: P08670


Modifications

Variants

Modification: none

This selection has only 1 modification in the database.

Fragments

Fragments

Fragment: 1-466

This selection has only 1 possible fragment in the database.


Showing 1 to 25 of 29 results
Name Molecule ID Fragment Modification Sequence mean pKd
Average affinity (mean of detectable pKd values)
between these molecules.
pKd = -log10Kd
Zeros (not detectable) are excluded from the mean.
std pKd
Standard deviation of pKd values
Shows the variability in measurements
Average BI
Average BI value
Considering all measurments
-log10P
If more measurements were done, the P values were combined as Pmax^K

Note that this approach is
overly conservative and
penalizing the overall result
if even one test is not
significant in order to
minimize the chance of false positives.
BDR
Binding Detection Ratio
Measured/Total
SNX27 Q96L92 1-541 — — 6.71 0.39 0.95 12.82 9 / 9
SNX27 Q96L92 40-141 — — 6.21 0.15 0.94 33.06 15 / 15
TX1BP3 O14907 7-124 — — 5.96 N/D 0.9 10.73 3 / 3
SCRIB Q14160 718-814 — — 5.71 N/D 0.83 9.89 3 / 3
SCRIB Q14160 858-949 — — 5.15 N/D 0.58 7.73 3 / 3
PRMT2 P55345 24-96 — — not detectable N/D -0.04 2.87 0 / 3
WEE1 P30291 228-247 — — not detectable N/D 0.01 0.37 0 / 6
BORA Q6PGQ7 18-38 — — not detectable N/D -0.01 0.23 0 / 6
PYGO2 Q9BRQ0 57-86 — — not detectable N/D -0.01 0.09 0 / 6
POLE2 P56282 1-527 — — not detectable N/D 0.02 0.09 0 / 6
SYNJ1 O43426 1390-1421 — — not detectable N/D -0.03 0.62 0 / 12
WDHD1 O75717 906-924 — — not detectable N/D -0.02 0.34 0 / 12
DONSON Q9NYP3 71-88 — — not detectable N/D -0.06 0.78 0 / 12
DLG1 Q12959 314-412 — — not detectable N/D -0 0.02 0 / 3
DLG1 Q12959 221-314 — — not detectable N/D 0 0.05 0 / 3
AMPH P49418 615-695 — — not detectable N/D 0 0.22 0 / 3
ABL1 P00519 56-121 — — not detectable N/D -0.07 4.67 0 / 3
DGKZ Q13574 919-928 — IQREDQETAV not detectable N/D 0.01 0.13 0 / 3
BIN1 O00499 513-593 — — not detectable N/D -0.15 5.91 0 / 6
ARHGEF7 Q14155 178-251 — — not detectable N/D 0 0.09 0 / 3
OBSCN Q5VST9 5594-5674 — — not detectable N/D -0.02 1.42 0 / 3
51_HAP NC_000001.11 203681832-203681862 — — not detectable N/D -0.11 4.13 0 / 3
51_WT NC_000001.11 203681832-203681862 rs10751451 — not detectable N/D -0.15 4.46 0 / 3
4945_HAP NC_000001.11 203681644-203681669 — — not detectable N/D -0.11 4.42 0 / 3
4945_WT NC_000001.11 203681644-203681669 rs10751449/rs10736845 — not detectable N/D -0.05 0.66 0 / 3
Showing 1 to 25 of 29 results
Showing 1 to 25 of 29 results

You see a fragment-specific affinity binding profile, where the average affinity is shown based on all measurements done between the same fragments of the same molecules.


This selected protein appears to bind to annotated motifs!
You can use glogo to visualize its the motif preference.

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