SYNJ2BP

Molecule type: protein
Alternative name(s): OMP25
External ID: P57105


Modifications

Variants

Modification: none

This selection has only 1 modification in the database.

Fragments

Fragments

Fragment: 6-103

A specific fragment is selected.

See all possible fragments

No statistical (volcano) data available for this fragment.

Showing fragment-specific summary data without graphics instead. (Will be fixed soon.)

Showing 1 to 25 of 456 results
Name Molecule ID Fragment Modification Sequence mean pKd
Average affinity (mean of detectable pKd values)
between these molecules.
pKd = -log10Kd
Zeros (not detectable) are excluded from the mean.
std pKd
Standard deviation of pKd values
Shows the variability in measurements
Average BI
Average BI value
Considering all measurments
-log10P
If more measurements were done, the P values were combined as Pmax^K

Note that this approach is
overly conservative and
penalizing the overall result
if even one test is not
significant in order to
minimize the chance of false positives.
BDR
Binding Detection Ratio
Measured/Total
HTLV1-TAX1 P03409 344-353 — SEKHFRETEV 5.82 0.29 0.8 0 8 / 8
ATP2B4 P23634 1232-1241 — SSLQSLETSV 5.55 0.10 0.7 0 3 / 3
HPV30-E6 P36809 144-153 — RHTTSTETAV 5.54 0.19 0.55 0 2 / 2
LNX2 Q8N448 681-690 — TVICWPGSLV 5.53 N/D 0.69 0 2 / 2
FRMPD4 Q14CM0 1313-1322 — RLPKIKETTV 5.51 0.10 0.7 0 5 / 5
HPV35-E6 P27228 140-149 — SKPTRRETEV 5.47 0.17 0.73 0 9 / 9
KARS1 Q15046 588-597 — LESTTVGTSV 5.44 N/D 0.76 0 1 / 1
RRBP1 Q9P2E9 1401-1410 — GSSSKEGTSV 5.41 N/D 0.75 0 1 / 1
VANGL1 Q8TAA9 515-524 — VLRLQSETSV 5.41 N/D 0.66 0 2 / 2
HPV31-E6 P17386 140-149 — SRRPRTETQV 5.41 N/D 0.66 0 4 / 4
GUCY1A2 P33402 723-732 — GTMFLRETSL 5.41 N/D 0.75 0 1 / 1
SLC15A5 A6NIM6 570-579 — SSIDLWETAL 5.40 0.21 0.55 0 7 / 7
HPV33-E6 P06427 140-149 — SRSRRRETAL 5.38 0.08 0.61 0 3 / 3
GRIN2C Q14957 1224-1233 — RRISSLESEV 5.38 N/D 0.74 0 1 / 1
ATRNL1 Q5VV63 1370-1379 — HLSTRQGTCV 5.37 N/D 0.74 0 1 / 1
FAM110D Q8TAY7 262-271 — ARGPPRESEV 5.35 N/D 0.73 0 1 / 1
ABCC4 O15439 1316-1325 — STLTIFETAL 5.35 0.12 0.65 0 7 / 7
PRKCA P17252 663-672 — FVHPILQSAV 5.31 N/D 0.71 0 1 / 1
CYSLTR2 Q9NS75 337-346 — SVWLRKETRV 5.30 0.06 0.62 0 3 / 3
BCR P11274 1262-1271 — RQSILFSTEV 5.28 N/D 0.7 0 1 / 1
ABCA1 O95477 2252-2261 — QDEKVKESYV 5.28 0.06 0.66 0 3 / 3
TANC1 Q9C0D5 1852-1861 — PKRSFIESNV 5.28 N/D 0.7 0 1 / 1
DGKI O75912 1056-1065 — IGHEDLETAV 5.25 N/D 0.69 0 1 / 1
FOXI1 Q12951 369-378 — VLYPREGTEV 5.23 N/D 0.68 0 1 / 1
CRHR1 P34998 435-444 — FHSIKQSTAV 5.21 N/D 0.68 0 1 / 1
Showing 1 to 25 of 456 results
Showing 1 to 25 of 456 results

You see a fragment-specific affinity binding profile, where the average affinity is shown based on all measurements done between the same fragments of the same molecules.


This selected protein appears to bind to annotated motifs!
You can use glogo to visualize its the motif preference.

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