Details of experiments between Q8NI35 and Q9NS75 Note that the results of all experiments are listed, regardless of the modification states of the fragments.
Experiment series 1 Protein A Protein: InaDl Fragment: 1425-1530 Site: PDZ_8 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: CYSLTR2 Fragment: 337-346 Site: PBM Sequence: SVWLRKETRV Construct: Biotin-ado-ado-SVWLRKETRV
Average holdup BI: 0.6
Normalized holdup BI: 0.63
Immobilized partner concentration (10-6 M): 18
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Number of measurements: 1
Measured pK d : 5.04
Experimental Details Crude peptide synthesis product. The peptide concentration in the affinity conversion step may differ from reality. Not reported internal standards of holdup layout #6
Experiment series 2 Protein A Protein: Inadl Fragment: 1425-1530 Site: PDZ_8 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: CYSLTR2 Fragment: 337-346 Site: PBM Sequence: SVWLRKETRV Construct: biotin-ttds-SVWLRKETRV
Average holdup BI: 0.22
Immobilized partner concentration (10-6 M): 6.7
Experiment method: SAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normal layout
Number of measurements: 1
Measured pK d : 4.69
Experiment series 3 Protein A Protein: Inadl Fragment: 1425-1530 Site: PDZ_8 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: CYSLTR2 Fragment: 337-346 Site: PBM Sequence: SVWLRKETRV Construct: biotin-ttds-SVWLRKETRV
Average holdup BI: 0.35
Holdup BI standard deviation: 0.06
Normalized holdup BI: 0.47
Normalized holdup BI standard deviation: 0.09
Immobilized partner concentration (10-6 M): 27
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Number of measurements: 2
Measured pK d : 4.55
Experiment series 4 Protein A Protein: InaDl Fragment: 673-780 Site: PDZ_5 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: CYSLTR2 Fragment: 337-346 Site: PBM Sequence: SVWLRKETRV Construct: Biotin-ado-ado-SVWLRKETRV
Average holdup BI: 0.14
Normalized holdup BI: 0.14
Immobilized partner concentration (10-6 M): 18
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Number of measurements: 1
Measured pK d : 3.98
Experimental Details Crude peptide synthesis product. The peptide concentration in the affinity conversion step may differ from reality. Not reported internal standards of holdup layout #6
Experiment series 5 Protein A Protein: InaDl Fragment: 1530-1615 Site: PDZ_9 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: CYSLTR2 Fragment: 337-346 Site: PBM Sequence: SVWLRKETRV Construct: Biotin-ado-ado-SVWLRKETRV
Average holdup BI: 0.14
Normalized holdup BI: 0.14
Immobilized partner concentration (10-6 M): 18
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Number of measurements: 1
Measured pK d : 3.97
Experimental Details Crude peptide synthesis product. The peptide concentration in the affinity conversion step may differ from reality. Not reported internal standards of holdup layout #6
Experiment series 6 Protein A Protein: InaDl Fragment: 1058-1167 Site: PDZ_6 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: CYSLTR2 Fragment: 337-346 Site: PBM Sequence: SVWLRKETRV Construct: Biotin-ado-ado-SVWLRKETRV
Average holdup BI: 0.07
Normalized holdup BI: 0.07
Immobilized partner concentration (10-6 M): 18
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Number of measurements: 1
Measured pK d : 3.66
Experimental Details Crude peptide synthesis product. The peptide concentration in the affinity conversion step may differ from reality. Not reported internal standards of holdup layout #6
Experiment series 7 Protein A Protein: Inadl Fragment: 673-780 Site: PDZ_5 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: CYSLTR2 Fragment: 337-346 Site: PBM Sequence: SVWLRKETRV Construct: biotin-ttds-SVWLRKETRV
Average holdup BI: 0.1
Holdup BI standard deviation: 0
Normalized holdup BI: 0.1
Normalized holdup BI standard deviation: 0
Immobilized partner concentration (10-6 M): 27
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Number of measurements: 2
Measured pK d : 3.62
Experiment series 8 Protein A Protein: Inadl Fragment: 1530-1615 Site: PDZ_9 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: CYSLTR2 Fragment: 337-346 Site: PBM Sequence: SVWLRKETRV Construct: biotin-ttds-SVWLRKETRV
Average holdup BI: 0.06
Holdup BI standard deviation: 0.03
Normalized holdup BI: 0.06
Normalized holdup BI standard deviation: 0.03
Immobilized partner concentration (10-6 M): 27
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Number of measurements: 2
Measured pK d : 3.39
Experiment series 9 Protein A Protein: InaDl Fragment: 113-229 Site: PDZ_1 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: CYSLTR2 Fragment: 337-346 Site: PBM Sequence: SVWLRKETRV Construct: Biotin-ado-ado-SVWLRKETRV
Average holdup BI: 0.02
Normalized holdup BI: 0.02
Immobilized partner concentration (10-6 M): 18
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Number of measurements: 1
The affinity was below the detection threshold of the assay.
Experimental Details Crude peptide synthesis product. The peptide concentration in the affinity conversion step may differ from reality. Not reported internal standards of holdup layout #6
Experiment series 10 Protein A Protein: InaDl Fragment: 1673-1763 Site: PDZ_10 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: CYSLTR2 Fragment: 337-346 Site: PBM Sequence: SVWLRKETRV Construct: Biotin-ado-ado-SVWLRKETRV
Average holdup BI: -0.01
Normalized holdup BI: -0.01
Immobilized partner concentration (10-6 M): 18
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Number of measurements: 1
The affinity was below the detection threshold of the assay.
Experimental Details Crude peptide synthesis product. The peptide concentration in the affinity conversion step may differ from reality. Not reported internal standards of holdup layout #6
Experiment series 11 Protein A Protein: InaDl Fragment: 238-335 Site: PDZ_2 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: CYSLTR2 Fragment: 337-346 Site: PBM Sequence: SVWLRKETRV Construct: Biotin-ado-ado-SVWLRKETRV
Average holdup BI: -0
Normalized holdup BI: -0
Immobilized partner concentration (10-6 M): 18
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Number of measurements: 1
The affinity was below the detection threshold of the assay.
Experimental Details Crude peptide synthesis product. The peptide concentration in the affinity conversion step may differ from reality. Not reported internal standards of holdup layout #6
Experiment series 12 Protein A Protein: InaDl Fragment: 359-469 Site: PDZ_3 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: CYSLTR2 Fragment: 337-346 Site: PBM Sequence: SVWLRKETRV Construct: Biotin-ado-ado-SVWLRKETRV
Average holdup BI: -0.01
Normalized holdup BI: -0.01
Immobilized partner concentration (10-6 M): 18
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Number of measurements: 1
The affinity was below the detection threshold of the assay.
Experimental Details Crude peptide synthesis product. The peptide concentration in the affinity conversion step may differ from reality. Not reported internal standards of holdup layout #6
Experiment series 13 Protein A Protein: InaDl Fragment: 547-651 Site: PDZ_4 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: CYSLTR2 Fragment: 337-346 Site: PBM Sequence: SVWLRKETRV Construct: Biotin-ado-ado-SVWLRKETRV
Average holdup BI: -0.05
Normalized holdup BI: -0.05
Immobilized partner concentration (10-6 M): 18
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Number of measurements: 1
The affinity was below the detection threshold of the assay.
Experimental Details Crude peptide synthesis product. The peptide concentration in the affinity conversion step may differ from reality. Not reported internal standards of holdup layout #6
Experiment series 14 Protein A Protein: Inadl Fragment: 1058-1167 Site: PDZ_6 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: CYSLTR2 Fragment: 337-346 Site: PBM Sequence: SVWLRKETRV Construct: biotin-ttds-SVWLRKETRV
Average holdup BI: -0.05
Immobilized partner concentration (10-6 M): 6.7
Experiment method: SAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normal layout
Number of measurements: 1
The affinity was below the detection threshold of the assay.
Experiment series 15 Protein A Protein: Inadl Fragment: 1058-1167 Site: PDZ_6 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: CYSLTR2 Fragment: 337-346 Site: PBM Sequence: SVWLRKETRV Construct: biotin-ttds-SVWLRKETRV
Average holdup BI: 0.02
Holdup BI standard deviation: 0.03
Normalized holdup BI: 0.02
Normalized holdup BI standard deviation: 0.03
Immobilized partner concentration (10-6 M): 27
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Number of measurements: 4
The affinity was below the detection threshold of the assay.
Experiment series 16 Protein A Protein: Inadl Fragment: 113-229 Site: PDZ_1 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: CYSLTR2 Fragment: 337-346 Site: PBM Sequence: SVWLRKETRV Construct: biotin-ttds-SVWLRKETRV
Average holdup BI: -0.16
Immobilized partner concentration (10-6 M): 6.7
Experiment method: SAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normal layout
Number of measurements: 1
The affinity was below the detection threshold of the assay.
Experiment series 17 Protein A Protein: Inadl Fragment: 113-229 Site: PDZ_1 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: CYSLTR2 Fragment: 337-346 Site: PBM Sequence: SVWLRKETRV Construct: biotin-ttds-SVWLRKETRV
Average holdup BI: 0.02
Holdup BI standard deviation: 0.06
Normalized holdup BI: 0.02
Normalized holdup BI standard deviation: 0.06
Immobilized partner concentration (10-6 M): 27
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Number of measurements: 2
The affinity was below the detection threshold of the assay.
Experiment series 18 Protein A Protein: Inadl Fragment: 1219-1332 Site: PDZ_7 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: CYSLTR2 Fragment: 337-346 Site: PBM Sequence: SVWLRKETRV Construct: biotin-ttds-SVWLRKETRV
Average holdup BI: -0.12
Immobilized partner concentration (10-6 M): 6.7
Experiment method: SAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normal layout
Number of measurements: 1
The affinity was below the detection threshold of the assay.
Experiment series 19 Protein A Protein: Inadl Fragment: 1530-1615 Site: PDZ_9 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: CYSLTR2 Fragment: 337-346 Site: PBM Sequence: SVWLRKETRV Construct: biotin-ttds-SVWLRKETRV
Average holdup BI: -0.06
Immobilized partner concentration (10-6 M): 6.7
Experiment method: SAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normal layout
Number of measurements: 1
The affinity was below the detection threshold of the assay.
Experiment series 20 Protein A Protein: Inadl Fragment: 1673-1763 Site: PDZ_10 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: CYSLTR2 Fragment: 337-346 Site: PBM Sequence: SVWLRKETRV Construct: biotin-ttds-SVWLRKETRV
Average holdup BI: -0.13
Immobilized partner concentration (10-6 M): 6.7
Experiment method: SAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normal layout
Number of measurements: 1
The affinity was below the detection threshold of the assay.
Experiment series 21 Protein A Protein: Inadl Fragment: 1673-1763 Site: PDZ_10 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: CYSLTR2 Fragment: 337-346 Site: PBM Sequence: SVWLRKETRV Construct: biotin-ttds-SVWLRKETRV
Average holdup BI: -0
Holdup BI standard deviation: 0.01
Normalized holdup BI: -0
Normalized holdup BI standard deviation: 0.01
Immobilized partner concentration (10-6 M): 27
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Number of measurements: 2
The affinity was below the detection threshold of the assay.
Experiment series 22 Protein A Protein: Inadl Fragment: 238-335 Site: PDZ_2 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: CYSLTR2 Fragment: 337-346 Site: PBM Sequence: SVWLRKETRV Construct: biotin-ttds-SVWLRKETRV
Average holdup BI: -0.07
Immobilized partner concentration (10-6 M): 6.7
Experiment method: SAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normal layout
Number of measurements: 1
The affinity was below the detection threshold of the assay.
Experiment series 23 Protein A Protein: Inadl Fragment: 238-335 Site: PDZ_2 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: CYSLTR2 Fragment: 337-346 Site: PBM Sequence: SVWLRKETRV Construct: biotin-ttds-SVWLRKETRV
Average holdup BI: 0
Holdup BI standard deviation: 0.02
Normalized holdup BI: 0
Normalized holdup BI standard deviation: 0.02
Immobilized partner concentration (10-6 M): 27
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Number of measurements: 2
The affinity was below the detection threshold of the assay.
Experiment series 24 Protein A Protein: Inadl Fragment: 359-469 Site: PDZ_3 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: CYSLTR2 Fragment: 337-346 Site: PBM Sequence: SVWLRKETRV Construct: biotin-ttds-SVWLRKETRV
Average holdup BI: -0.1
Immobilized partner concentration (10-6 M): 6.7
Experiment method: SAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normal layout
Number of measurements: 1
The affinity was below the detection threshold of the assay.
Experiment series 25 Protein A Protein: Inadl Fragment: 359-469 Site: PDZ_3 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: CYSLTR2 Fragment: 337-346 Site: PBM Sequence: SVWLRKETRV Construct: biotin-ttds-SVWLRKETRV
Average holdup BI: -0.03
Holdup BI standard deviation: 0
Normalized holdup BI: -0.03
Normalized holdup BI standard deviation: 0
Immobilized partner concentration (10-6 M): 27
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Number of measurements: 2
The affinity was below the detection threshold of the assay.
Experiment series 26 Protein A Protein: Inadl Fragment: 547-651 Site: PDZ_4 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: CYSLTR2 Fragment: 337-346 Site: PBM Sequence: SVWLRKETRV Construct: biotin-ttds-SVWLRKETRV
Average holdup BI: -0.13
Immobilized partner concentration (10-6 M): 6.7
Experiment method: SAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normal layout
Number of measurements: 1
The affinity was below the detection threshold of the assay.
Experiment series 27 Protein A Protein: Inadl Fragment: 547-651 Site: PDZ_4 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: CYSLTR2 Fragment: 337-346 Site: PBM Sequence: SVWLRKETRV Construct: biotin-ttds-SVWLRKETRV
Average holdup BI: -0.04
Holdup BI standard deviation: 0.03
Normalized holdup BI: -0.04
Normalized holdup BI standard deviation: 0.03
Immobilized partner concentration (10-6 M): 27
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Number of measurements: 2
The affinity was below the detection threshold of the assay.
Experiment series 28 Protein A Protein: Inadl Fragment: 673-780 Site: PDZ_5 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: CYSLTR2 Fragment: 337-346 Site: PBM Sequence: SVWLRKETRV Construct: biotin-ttds-SVWLRKETRV
Average holdup BI: -0.01
Immobilized partner concentration (10-6 M): 6.7
Experiment method: SAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normal layout
Number of measurements: 1
The affinity was below the detection threshold of the assay.
Please cite ProfAff! (Gogl, G. et al., Nature Communications 2022)
© The ProfAff database is developped by the research team of Gergo Gogl .