Details of experiments between Q86UL8 and P03126 Note that the results of all experiments are listed, regardless of the modification states of the fragments.
Experiment series 1 Protein A Protein: MAGI2 Fragment: 410-522 Site: PDZ_2 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: HPV16-E6 Fragment: 149-158 Site: PBM Sequence: SSRTRRETQL Construct: Biotin-ado-ado-SSRTRRETQL
Average holdup BI: 0.77
Normalized holdup BI: 0.86
Immobilized partner concentration (10-6 M): 18
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Number of measurements: 1
Measured pK d : 5.61
Experimental Details Crude peptide synthesis product. The peptide concentration in the affinity conversion step may differ from reality. Not reported internal standards of holdup layout #6
Experiment series 2 Protein A Protein: MAGI2 Fragment: 410-522 Site: PDZ_2 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: HPV16-E6 Fragment: 149-158 Site: PBM Sequence: SSRTRRETQL Construct: biotin-ttds-SSRTRRETQL
Average holdup BI: 0.81
Holdup BI standard deviation: 0.11
Immobilized partner concentration (10-6 M): 15
Experiment method: CALIP_holdup
Details of affinity fitting: BSA and lysozyme internal standards + bacterial cell lysate + normal layout
Number of measurements: 7
Measured pK d : 5.57
Experiment series 3 Protein A Protein: MAGI2 Fragment: 410-522 Site: PDZ_2 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: HPV16-E6 Fragment: 149-158 Site: PBM Sequence: SSRTRRETQL Construct: Biotin-ttds-SSRTRRETQL
Measured dissociation constant (10-6 M): 2.9
Standard deviation of dissociation constant (10-6 M): 0.14
Experiment method: SPR
Number of measurements: 1
Measured pK d : 5.54
Experiment series 4 Protein A Protein: MAGI2 Fragment: 410-522 Site: PDZ_2 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: HPV16-E6 Fragment: 149-158 Site: PBM Sequence: SSRTRRETQL Construct: biotin-ttds-SSRTRRETQL
Measured dissociation constant (10-6 M): 3.53
Standard deviation of dissociation constant (10-6 M): 0.12
Experiment method: competitive FP
Details of affinity fitting: Competitive binding equation in ProFit
Number of measurements: 3
Measured pK d : 5.45
Experiment series 5 Protein A Protein: MAGI2 Fragment: 410-522 Site: PDZ_2 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: HPV16-E6 Fragment: 149-158 Site: PBM Sequence: SSRTRRETQL Construct: biotin-ttds-SSRTRRETQL
Average holdup BI: 0.53
Normalized holdup BI: 0.64
Immobilized partner concentration (10-6 M): 18
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Number of measurements: 1
Measured pK d : 5.06
Experimental Details not reported internal standards of holdup layout #5
Experiment series 6 Protein A Protein: MAGI2 Fragment: 410-522 Site: PDZ_2 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: HPV16-E6 Fragment: 149-158 Site: PBM Sequence: SSRTRRETQL Construct: biotin-ttds-SSRTRRETQL
Average holdup BI: 0.57
Normalized holdup BI: 0.63
Immobilized partner concentration (10-6 M): 18
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Number of measurements: 1
Measured pK d : 5.03
Experimental Details not reported internal standards of holdup layout #5
Experiment series 7 Protein A Protein: MAGI2 Fragment: 410-522 Site: PDZ_2 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: HPV16-E6 Fragment: 149-158 Site: PBM Sequence: SSRTRRETQL Construct: biotin-ttds-SSRTRRETQL
Average holdup BI: 0.49
Holdup BI standard deviation: 0.06
Normalized holdup BI: 0.54
Normalized holdup BI standard deviation: 0.07
Immobilized partner concentration (10-6 M): 18
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Number of measurements: 2
Measured pK d : 4.87
Experiment series 8 Protein A Protein: MAGI2 Fragment: 915-1017 Site: PDZ_5 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: HPV16-E6 Fragment: 149-158 Site: PBM Sequence: SSRTRRETQL Construct: biotin-ttds-SSRTRRETQL
Average holdup BI: 0.13
Normalized holdup BI: 0.13
Immobilized partner concentration (10-6 M): 18
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Number of measurements: 1
Measured pK d : 3.93
Experiment series 9 Protein A Protein: MAGI2 Fragment: 772-865 Site: PDZ_4 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: HPV16-E6 Fragment: 149-158 Site: PBM Sequence: SSRTRRETQL Construct: biotin-ttds-SSRTRRETQL
Average holdup BI: 0.08
Normalized holdup BI: 0.12
Immobilized partner concentration (10-6 M): 18
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Number of measurements: 1
Measured pK d : 3.89
Experiment series 10 Protein A Protein: MAGI2 Fragment: 915-1017 Site: PDZ_5 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: HPV16-E6 Fragment: 149-158 Site: PBM Sequence: SSRTRRETQL Construct: biotin-ttds-SSRTRRETQL
Average holdup BI: 0.12
Normalized holdup BI: 0.12
Immobilized partner concentration (10-6 M): 18
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Number of measurements: 1
Measured pK d : 3.88
Experimental Details not reported internal standards of holdup layout #5
Experiment series 11 Protein A Protein: MAGI2 Fragment: 915-1017 Site: PDZ_5 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: HPV16-E6 Fragment: 149-158 Site: PBM Sequence: SSRTRRETQL Construct: Biotin-ado-ado-SSRTRRETQL
Average holdup BI: 0.11
Normalized holdup BI: 0.11
Immobilized partner concentration (10-6 M): 18
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Number of measurements: 1
Measured pK d : 3.86
Experimental Details Crude peptide synthesis product. The peptide concentration in the affinity conversion step may differ from reality. Not reported internal standards of holdup layout #6
Experiment series 12 Protein A Protein: MAGI2 Fragment: 600-682 Site: PDZ_3 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: HPV16-E6 Fragment: 149-158 Site: PBM Sequence: SSRTRRETQL Construct: biotin-ttds-SSRTRRETQL
Average holdup BI: 0.06
Normalized holdup BI: 0.08
Immobilized partner concentration (10-6 M): 18
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Number of measurements: 1
Measured pK d : 3.67
Experiment series 13 Protein A Protein: MAGI2 Fragment: 1141-1229 Site: PDZ_6 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: HPV16-E6 Fragment: 149-158 Site: PBM Sequence: SSRTRRETQL Construct: biotin-ttds-SSRTRRETQL
Average holdup BI: 0.06
Normalized holdup BI: 0.07
Immobilized partner concentration (10-6 M): 18
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Number of measurements: 1
Measured pK d : 3.61
Experiment series 14 Protein A Protein: MAGI2 Fragment: 772-865 Site: PDZ_4 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: HPV16-E6 Fragment: 149-158 Site: PBM Sequence: SSRTRRETQL Construct: biotin-ttds-SSRTRRETQL
Average holdup BI: 0.06
Normalized holdup BI: 0.07
Immobilized partner concentration (10-6 M): 18
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Number of measurements: 1
Measured pK d : 3.6
Experimental Details not reported internal standards of holdup layout #5
Experiment series 15 Protein A Protein: MAGI2 Fragment: 1141-1229 Site: PDZ_6 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: HPV16-E6 Fragment: 149-158 Site: PBM Sequence: SSRTRRETQL Construct: Biotin-ado-ado-SSRTRRETQL
Average holdup BI: 0.05
Normalized holdup BI: 0.05
Immobilized partner concentration (10-6 M): 18
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Number of measurements: 1
Measured pK d : 3.48
Experimental Details Crude peptide synthesis product. The peptide concentration in the affinity conversion step may differ from reality. Not reported internal standards of holdup layout #6
Experiment series 16 Protein A Protein: MAGI2 Fragment: 1-102 Site: PDZ_1 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: HPV16-E6 Fragment: 149-158 Site: PBM Sequence: SSRTRRETQL Construct: biotin-ttds-SSRTRRETQL
Average holdup BI: 0.02
Holdup BI standard deviation: 0.03
Immobilized partner concentration (10-6 M): 15
Experiment method: CALIP_holdup
Details of affinity fitting: BSA and lysozyme internal standards + bacterial cell lysate + normal layout
Number of measurements: 6
The affinity was below the detection threshold of the assay.
Experiment series 17 Protein A Protein: MAGI2 Fragment: 1141-1229 Site: PDZ_6 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: HPV16-E6 Fragment: 149-158 Site: PBM Sequence: SSRTRRETQL Construct: biotin-ttds-SSRTRRETQL
Average holdup BI: 0.01
Normalized holdup BI: 0.02
Immobilized partner concentration (10-6 M): 18
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Number of measurements: 1
The affinity was below the detection threshold of the assay.
Experimental Details not reported internal standards of holdup layout #5
Experiment series 18 Protein A Protein: MAGI2 Fragment: 1141-1229 Site: PDZ_6 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: HPV16-E6 Fragment: 149-158 Site: PBM Sequence: SSRTRRETQL Construct: biotin-ttds-SSRTRRETQL
Average holdup BI: 0.09
Holdup BI standard deviation: 0.04
Immobilized partner concentration (10-6 M): 15
Experiment method: CALIP_holdup
Details of affinity fitting: BSA and lysozyme internal standards + bacterial cell lysate + normal layout
Number of measurements: 7
The affinity was below the detection threshold of the assay.
Experiment series 19 Protein A Protein: MAGI2 Fragment: 600-682 Site: PDZ_3 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: HPV16-E6 Fragment: 149-158 Site: PBM Sequence: SSRTRRETQL Construct: Biotin-ado-ado-SSRTRRETQL
Average holdup BI: -0.01
Normalized holdup BI: -0.01
Immobilized partner concentration (10-6 M): 18
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Number of measurements: 1
The affinity was below the detection threshold of the assay.
Experimental Details Crude peptide synthesis product. The peptide concentration in the affinity conversion step may differ from reality. Not reported internal standards of holdup layout #6
Experiment series 20 Protein A Protein: MAGI2 Fragment: 600-682 Site: PDZ_3 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: HPV16-E6 Fragment: 149-158 Site: PBM Sequence: SSRTRRETQL Construct: biotin-ttds-SSRTRRETQL
Average holdup BI: 0
Normalized holdup BI: 0
Immobilized partner concentration (10-6 M): 18
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Number of measurements: 1
The affinity was below the detection threshold of the assay.
Experimental Details not reported internal standards of holdup layout #5
Experiment series 21 Protein A Protein: MAGI2 Fragment: 600-682 Site: PDZ_3 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: HPV16-E6 Fragment: 149-158 Site: PBM Sequence: SSRTRRETQL Construct: biotin-ttds-SSRTRRETQL
Average holdup BI: 0.03
Holdup BI standard deviation: 0.09
Immobilized partner concentration (10-6 M): 15
Experiment method: CALIP_holdup
Details of affinity fitting: BSA and lysozyme internal standards + bacterial cell lysate + normal layout
Number of measurements: 7
The affinity was below the detection threshold of the assay.
Experiment series 22 Protein A Protein: MAGI2 Fragment: 772-865 Site: PDZ_4 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: HPV16-E6 Fragment: 149-158 Site: PBM Sequence: SSRTRRETQL Construct: Biotin-ado-ado-SSRTRRETQL
Average holdup BI: 0.02
Normalized holdup BI: 0.03
Immobilized partner concentration (10-6 M): 18
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Number of measurements: 1
The affinity was below the detection threshold of the assay.
Experimental Details Crude peptide synthesis product. The peptide concentration in the affinity conversion step may differ from reality. Not reported internal standards of holdup layout #6
Experiment series 23 Protein A Protein: MAGI2 Fragment: 772-865 Site: PDZ_4 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: HPV16-E6 Fragment: 149-158 Site: PBM Sequence: SSRTRRETQL Construct: biotin-ttds-SSRTRRETQL
Average holdup BI: 0.06
Holdup BI standard deviation: 0.04
Immobilized partner concentration (10-6 M): 15
Experiment method: CALIP_holdup
Details of affinity fitting: BSA and lysozyme internal standards + bacterial cell lysate + normal layout
Number of measurements: 7
The affinity was below the detection threshold of the assay.
Experiment series 24 Protein A Protein: MAGI2 Fragment: 915-1017 Site: PDZ_5 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: HPV16-E6 Fragment: 149-158 Site: PBM Sequence: SSRTRRETQL Construct: biotin-ttds-SSRTRRETQL
Average holdup BI: 0.09
Holdup BI standard deviation: 0.14
Immobilized partner concentration (10-6 M): 15
Experiment method: CALIP_holdup
Details of affinity fitting: BSA and lysozyme internal standards + bacterial cell lysate + normal layout
Number of measurements: 5
The affinity was below the detection threshold of the assay.
Experiment series 25 Protein A Protein: MAGI2 Fragment: 1-102 Site: PDZ_1 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: HPV16-E6 Fragment: 149-158 Site: PBM Modification: (TPO)156 Sequence: SSRTRRETQL Construct: Biotin-ttds-SSRTRREpTQL
Average holdup BI: -0.03
Immobilized partner concentration (10-6 M): 18
Experiment method: CALIP_holdup
Details of affinity fitting: BSA and lysozyme internal standards + bacterial cell lysate + normal layout
Number of measurements: 1
The affinity was below the detection threshold of the assay.
Experiment series 26 Protein A Protein: MAGI2 Fragment: 1141-1229 Site: PDZ_6 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: HPV16-E6 Fragment: 149-158 Site: PBM Modification: (TPO)156 Sequence: SSRTRRETQL Construct: Biotin-ttds-SSRTRREpTQL
Average holdup BI: -0.02
Normalized holdup BI: -0.02
Immobilized partner concentration (10-6 M): 18
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Number of measurements: 1
The affinity was below the detection threshold of the assay.
Experiment series 27 Protein A Protein: MAGI2 Fragment: 1141-1229 Site: PDZ_6 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: HPV16-E6 Fragment: 149-158 Site: PBM Modification: (TPO)156 Sequence: SSRTRRETQL Construct: Biotin-ttds-SSRTRREpTQL
Average holdup BI: 0.04
Immobilized partner concentration (10-6 M): 18
Experiment method: CALIP_holdup
Details of affinity fitting: BSA and lysozyme internal standards + bacterial cell lysate + normal layout
Number of measurements: 1
The affinity was below the detection threshold of the assay.
Experiment series 28 Protein A Protein: MAGI2 Fragment: 410-522 Site: PDZ_2 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: HPV16-E6 Fragment: 149-158 Site: PBM Modification: (TPO)156 Sequence: SSRTRRETQL Construct: Biotin-ttds-SSRTRREpTQL
Average holdup BI: -0.01
Normalized holdup BI: -0.01
Immobilized partner concentration (10-6 M): 18
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Number of measurements: 1
The affinity was below the detection threshold of the assay.
Experiment series 29 Protein A Protein: MAGI2 Fragment: 410-522 Site: PDZ_2 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: HPV16-E6 Fragment: 149-158 Site: PBM Modification: (TPO)156 Sequence: SSRTRRETQL Construct: Biotin-ttds-SSRTRREpTQL
Average holdup BI: 0.01
Immobilized partner concentration (10-6 M): 18
Experiment method: CALIP_holdup
Details of affinity fitting: BSA and lysozyme internal standards + bacterial cell lysate + normal layout
Number of measurements: 1
The affinity was below the detection threshold of the assay.
Experiment series 30 Protein A Protein: MAGI2 Fragment: 410-522 Site: PDZ_2 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: HPV16-E6 Fragment: 149-158 Site: PBM Modification: (TPO)156 Sequence: SSRTRRETQL Construct: Biotin-ttds-SSRTRREpTQL
Measured dissociation constant (10-6 M): 0
Experiment method: competitive FP
Details of affinity fitting: Competitive binding equation in ProFit
Number of measurements: 3
The affinity was below the detection threshold of the assay.
Experiment series 31 Protein A Protein: MAGI2 Fragment: 600-682 Site: PDZ_3 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: HPV16-E6 Fragment: 149-158 Site: PBM Modification: (TPO)156 Sequence: SSRTRRETQL Construct: Biotin-ttds-SSRTRREpTQL
Average holdup BI: -0.09
Immobilized partner concentration (10-6 M): 18
Experiment method: CALIP_holdup
Details of affinity fitting: BSA and lysozyme internal standards + bacterial cell lysate + normal layout
Number of measurements: 1
The affinity was below the detection threshold of the assay.
Experiment series 32 Protein A Protein: MAGI2 Fragment: 600-682 Site: PDZ_3 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: HPV16-E6 Fragment: 149-158 Site: PBM Modification: (TPO)156 Sequence: SSRTRRETQL Construct: Biotin-ttds-SSRTRREpTQL
Average holdup BI: 0.01
Normalized holdup BI: 0.01
Immobilized partner concentration (10-6 M): 18
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Number of measurements: 1
The affinity was below the detection threshold of the assay.
Experiment series 33 Protein A Protein: MAGI2 Fragment: 772-865 Site: PDZ_4 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: HPV16-E6 Fragment: 149-158 Site: PBM Modification: (TPO)156 Sequence: SSRTRRETQL Construct: Biotin-ttds-SSRTRREpTQL
Average holdup BI: 0.01
Normalized holdup BI: 0.01
Immobilized partner concentration (10-6 M): 18
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Number of measurements: 1
The affinity was below the detection threshold of the assay.
Experiment series 34 Protein A Protein: MAGI2 Fragment: 772-865 Site: PDZ_4 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: HPV16-E6 Fragment: 149-158 Site: PBM Modification: (TPO)156 Sequence: SSRTRRETQL Construct: Biotin-ttds-SSRTRREpTQL
Average holdup BI: 0.02
Immobilized partner concentration (10-6 M): 18
Experiment method: CALIP_holdup
Details of affinity fitting: BSA and lysozyme internal standards + bacterial cell lysate + normal layout
Number of measurements: 1
The affinity was below the detection threshold of the assay.
Experiment series 35 Protein A Protein: MAGI2 Fragment: 915-1017 Site: PDZ_5 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: HPV16-E6 Fragment: 149-158 Site: PBM Modification: (TPO)156 Sequence: SSRTRRETQL Construct: Biotin-ttds-SSRTRREpTQL
Average holdup BI: -0.05
Immobilized partner concentration (10-6 M): 18
Experiment method: CALIP_holdup
Details of affinity fitting: BSA and lysozyme internal standards + bacterial cell lysate + normal layout
Number of measurements: 1
The affinity was below the detection threshold of the assay.
Experiment series 36 Protein A Protein: MAGI2 Fragment: 915-1017 Site: PDZ_5 Construct: his6-MBP-TEVsite-PDZ
Protein B Protein: HPV16-E6 Fragment: 149-158 Site: PBM Modification: (TPO)156 Sequence: SSRTRRETQL Construct: Biotin-ttds-SSRTRREpTQL
Average holdup BI: -0.02
Normalized holdup BI: -0.02
Immobilized partner concentration (10-6 M): 18
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Number of measurements: 1
The affinity was below the detection threshold of the assay.
Please cite ProfAff! (Gogl, G. et al., Nature Communications 2022)
© The ProfAff database is developped by the research team of Gergo Gogl .