Interaction Details


Details of experiments between Q5KSL6 and Q9H5P4
Note that the results of all experiments are listed, regardless of the modification states of the fragments.


Experiment series 1

Protein A

Protein: DGKK
Fragment: 1262-1271
Site: PBM
Sequence: DPLTPSRSQL
Construct: biotin-ttds-DPLTPSRSQL

Protein B

Protein: PDZD7
Fragment: 858-953
Site: PDZ_3
Construct: his6-MBP-TEVsite-PDZ
Average holdup BI: 0.2
Immobilized partner concentration (10-6M): 10
Experiment method: SAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normal layout
Number of measurements: 1
Measured pKd: 4.45
PUBMED ID: 36115835

Experiment series 2

Protein A

Protein: DGKK
Fragment: 1262-1271
Site: PBM
Sequence: DPLTPSRSQL
Construct: biotin-ttds-DPLTPSRSQL

Protein B

Protein: PDZD7
Fragment: 199-313
Site: PDZ_2
Construct: his6-MBP-TEVsite-PDZ
Average holdup BI: -0.1
Immobilized partner concentration (10-6M): 10
Experiment method: SAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normal layout
Number of measurements: 1
The affinity was below the detection threshold of the assay.
PUBMED ID: 36115835

Experiment series 3

Protein A

Protein: DGKK
Fragment: 1262-1271
Site: PBM
Sequence: DPLTPSRSQL
Construct: biotin-ttds-DPLTPSRSQL

Protein B

Protein: PDZD7
Fragment: 82-170
Site: PDZ_1
Construct: his6-MBP-TEVsite-PDZ
Average holdup BI: -0.18
Immobilized partner concentration (10-6M): 10
Experiment method: SAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normal layout
Number of measurements: 1
The affinity was below the detection threshold of the assay.
PUBMED ID: 36115835

Experiment series 4

Protein A

Protein: DGKK
Fragment: 1262-1271
Site: PBM
Sequence: DPLTPSRSQL
Construct: biotin-ttds-DPLTPSRSQL

Protein B

Protein: PDZD7
Fragment: 858-953
Site: PDZ_3
Construct: his6-MBP-TEVsite-PDZ
Average holdup BI: 0
Normalized holdup BI: 0
Immobilized partner concentration (10-6M): 18
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Number of measurements: 1
The affinity was below the detection threshold of the assay.
PUBMED ID: 36115835