Interaction Details


Details of experiments between Q14160 and Q9UBN1
Note that the results of all experiments are listed, regardless of the modification states of the fragments.


Experiment series 1

Protein A

Protein: SCRIB
Fragment: 999-1093
Site: PDZ_3
Construct: his6-MBP-TEVsite-PDZ

Protein B

Protein: CACNG4
Fragment: 318-327
Site: PBM
Sequence: SMLNRRTTPV
Construct: biotin-ado-ado-SMLNRRTTPV
Average holdup BI: 0.15
Holdup BI standard deviation: 0.07
Normalized holdup BI: 0.18
Normalized holdup BI standard deviation: 0.09
Immobilized partner concentration (10-6M): 18
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Number of measurements: 2
Measured pKd: 4.11
PUBMED ID: 36115835
Experimental Details

Crude peptide synthesis product. The peptide concentration in the affinity conversion step may differ from reality causing a systematic error in reported affinities.

Experiment series 2

Protein A

Protein: SCRIB
Fragment: 718-814
Site: PDZ_1
Construct: his6-MBP-TEVsite-PDZ

Protein B

Protein: CACNG4
Fragment: 318-327
Site: PBM
Sequence: SMLNRRTTPV
Construct: biotin-ado-ado-SMLNRRTTPV
Average holdup BI: 0.06
Holdup BI standard deviation: 0.02
Normalized holdup BI: 0.06
Normalized holdup BI standard deviation: 0.02
Immobilized partner concentration (10-6M): 18
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Number of measurements: 2
Measured pKd: 3.56
PUBMED ID: 36115835
Experimental Details

Crude peptide synthesis product. The peptide concentration in the affinity conversion step may differ from reality causing a systematic error in reported affinities.

Experiment series 3

Protein A

Protein: SCRIB
Fragment: 858-949
Site: PDZ_2
Construct: his6-MBP-TEVsite-PDZ

Protein B

Protein: CACNG4
Fragment: 318-327
Site: PBM
Sequence: SMLNRRTTPV
Construct: biotin-ado-ado-SMLNRRTTPV
Average holdup BI: 0.06
Holdup BI standard deviation: 0.01
Normalized holdup BI: 0.06
Normalized holdup BI standard deviation: 0.01
Immobilized partner concentration (10-6M): 18
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Number of measurements: 2
Measured pKd: 3.53
PUBMED ID: 36115835
Experimental Details

Crude peptide synthesis product. The peptide concentration in the affinity conversion step may differ from reality causing a systematic error in reported affinities.