Interaction Details


Details of experiments between P63104 and Q9UQL6
Note that the results of all experiments are listed, regardless of the modification states of the fragments.


Experiment series 1

Protein A

Protein: YWHAZ
Fragment: 1-245
Site: 14-3-3
Construct: avi-his6-MBP-TEVsite-14-3-3zeta

Protein B

Protein: HDAC5
Fragment: 254-263
Site: 14-3-3_pSer259
Modification: (SEP)259
Sequence: LRKTASEPNL
Construct: LRKTA(pSer)EPNL (crude synthetic peptide)
Average holdup BI: 0.95
Holdup BI standard deviation: 0.04
Immobilized partner concentration (10-6M): 132
P value: 8.76
Experiment method: HU Multiplex
Details of affinity fitting: hyperbolic binding equation
Date of measurement: 2021-10-13
Number of measurements: 5
Measured pKd: 5.13
DOI: 10.1101/2022.12.08.519103
Experimental Details

-log10(P Two-sided unpaired T-test (4 vs 5))

Experiment series 2

Protein A

Protein: YWHAZ
Fragment: 1-245
Site: 14-3-3
Construct: avi-his6-MBP-TEVsite-14-3-3zeta

Protein B

Protein: HDAC5
Fragment: 493-502
Site: 14-3-3_pSer498
Modification: (SEP)498
Sequence: LSRTQSSPLP
Construct: LSRTQ(pSer)SPLP (crude synthetic peptide)
Average holdup BI: 0.61
Holdup BI standard deviation: 0.05
Immobilized partner concentration (10-6M): 132
P value: 6.26
Experiment method: HU Multiplex
Details of affinity fitting: hyperbolic binding equation
Date of measurement: 2021-10-13
Number of measurements: 5
Measured pKd: 4.07
DOI: 10.1101/2022.12.08.519103
Experimental Details

-log10(P Two-sided unpaired T-test (4 vs 5))

Experiment series 3

Protein A

Protein: YWHAZ
Fragment: 1-245
Site: 14-3-3
Construct: avi-his6-MBP-TEVsite-14-3-3zeta

Protein B

Protein: HDAC5
Fragment: 542-551
Site: 14-3-3_pThr547
Modification: (TPO)547
Sequence: PRQPTTHPEE
Construct: PRQPT(pThr)HPEE (crude synthetic peptide)
Average holdup BI: 0.18
Holdup BI standard deviation: 0.13
Immobilized partner concentration (10-6M): 132
P value: 1.55
Experiment method: HU Multiplex
Details of affinity fitting: hyperbolic binding equation
Date of measurement: 2021-10-13
Number of measurements: 5
The affinity was below the detection threshold of the assay.
DOI: 10.1101/2022.12.08.519103
Experimental Details

-log10(P Two-sided unpaired T-test (4 vs 5))