Interaction Details


Details of experiments between P03409 and Q15700
Note that the results of all experiments are listed, regardless of the modification states of the fragments.


Experiment series 1

Protein A

Protein: HTLV1-TAX1
Fragment: 344-353
Site: PBM
Sequence: SEKHFRETEV
Construct: Biotin-ado-ado-SEKHFRETEV

Protein B

Protein: DLG2
Fragment: 189-283
Site: PDZ_2
Construct: his6-MBP-TEVsite-PDZ
Average holdup BI: 0.69
Normalized holdup BI: 0.82
Immobilized partner concentration (10-6M): 18
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Number of measurements: 1
Measured pKd: 5.48
PUBMED ID: 36115835
Experimental Details

Crude peptide synthesis product. The peptide concentration in the affinity conversion step may differ from reality. Not reported internal standards of holdup layout #6

Experiment series 2

Protein A

Protein: HTLV1-TAX1
Fragment: 344-353
Site: PBM
Sequence: SEKHFRETEV
Construct: biotin-ttds-SEKHFRETEV

Protein B

Protein: DLG2
Fragment: 418-513
Site: PDZ_3
Construct: his6-MBP-TEVsite-PDZ
Average holdup BI: 0.73
Holdup BI standard deviation: 0.02
Normalized holdup BI: 0.73
Normalized holdup BI standard deviation: 0.02
Immobilized partner concentration (10-6M): 15
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Number of measurements: 2
Measured pKd: 5.36
PUBMED ID: 36115835

Experiment series 3

Protein A

Protein: HTLV1-TAX1
Fragment: 344-353
Site: PBM
Sequence: SEKHFRETEV
Construct: Biotin-ado-ado-SEKHFRETEV

Protein B

Protein: DLG2
Fragment: 418-513
Site: PDZ_3
Construct: his6-MBP-TEVsite-PDZ
Average holdup BI: 0.76
Normalized holdup BI: 0.76
Immobilized partner concentration (10-6M): 18
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Number of measurements: 1
Measured pKd: 5.33
PUBMED ID: 36115835
Experimental Details

Crude peptide synthesis product. The peptide concentration in the affinity conversion step may differ from reality. Not reported internal standards of holdup layout #6

Experiment series 4

Protein A

Protein: HTLV1-TAX1
Fragment: 344-353
Site: PBM
Sequence: SEKHFRETEV
Construct: biotin-ttds-SEKHFRETEV

Protein B

Protein: DLG2
Fragment: 418-513
Site: PDZ_3
Construct: his6-MBP-TEVsite-PDZ
Average holdup BI: 0.76
Immobilized partner concentration (10-6M): 19
Experiment method: CALIP_holdup
Details of affinity fitting: BSA and lysozyme internal standards + bacterial cell lysate + normal layout
Number of measurements: 1
Measured pKd: 5.3
PUBMED ID: 36115835

Experiment series 5

Protein A

Protein: HTLV1-TAX1
Fragment: 344-353
Site: PBM
Sequence: SEKHFRETEV
Construct: biotin-ttds-SEKHFRETEV

Protein B

Protein: DLG2
Fragment: 189-283
Site: PDZ_2
Construct: his6-MBP-TEVsite-PDZ
Average holdup BI: 0.67
Holdup BI standard deviation: 0.04
Normalized holdup BI: 0.67
Normalized holdup BI standard deviation: 0.04
Immobilized partner concentration (10-6M): 15
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Number of measurements: 2
Measured pKd: 5.21
PUBMED ID: 36115835

Experiment series 6

Protein A

Protein: HTLV1-TAX1
Fragment: 344-353
Site: PBM
Sequence: SEKHFRETEV
Construct: biotin-ttds-SEKHFRETEV

Protein B

Protein: DLG2
Fragment: 189-283
Site: PDZ_2
Construct: his6-MBP-TEVsite-PDZ
Average holdup BI: 0.72
Holdup BI standard deviation: 0.02
Immobilized partner concentration (10-6M): 19
Experiment method: CALIP_holdup
Details of affinity fitting: BSA and lysozyme internal standards + bacterial cell lysate + normal layout
Number of measurements: 2
Measured pKd: 5.19
PUBMED ID: 36115835

Experiment series 7

Protein A

Protein: HTLV1-TAX1
Fragment: 344-353
Site: PBM
Sequence: SEKHFRETEV
Construct: biotin-ttds-SEKHFRETEV

Protein B

Protein: DLG2
Fragment: 93-186
Site: PDZ_1
Construct: his6-MBP-TEVsite-PDZ
Average holdup BI: 0.7
Holdup BI standard deviation: 0.04
Immobilized partner concentration (10-6M): 19
Experiment method: CALIP_holdup
Details of affinity fitting: BSA and lysozyme internal standards + bacterial cell lysate + normal layout
Number of measurements: 2
Measured pKd: 5.16
PUBMED ID: 36115835